STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101871842Ubiquitin carboxyl-terminal hydrolase 4-like. (240 aa)    
Predicted Functional Partners:
LOC101872650
Ubiquitin specific peptidase 21.
 
  
 
 0.905
SART3
Spliceosome associated factor 3, U4/U6 recycling protein.
    
 
 0.808
TRAF6
TNF receptor associated factor 6.
    
 0.744
TGFBR1
Transforming growth factor beta receptor 1.
    
 0.723
SMURF2
SMAD specific E3 ubiquitin protein ligase 2.
    
 0.694
SMAD7
SMAD family member 7.
    
 0.671
MYSM1
Myb like, SWIRM and MPN domains 1.
   
 
 0.671
LOC101874167
Ribosomal protein S27a.
    
 0.659
MRPS9
Mitochondrial ribosomal protein S9.
   
 
 0.658
RNF123
Ring finger protein 123.
   
 0.649
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.