STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX47DEAD-box helicase 47. (453 aa)    
Predicted Functional Partners:
UTP3
UTP3 small subunit processome component.
   
 0.999
ESF1
ESF1 nucleolar pre-rRNA processing protein homolog.
   
 
 0.995
PDCD11
Programmed cell death 11.
  
 0.990
DDX52
DExD-box helicase 52.
  
0.989
NOP14
NOP14 nucleolar protein.
   
 0.986
BOP1
BOP1 ribosomal biogenesis factor.
   
 0.977
DCAF13
DDB1 and CUL4 associated factor 13.
   
 0.972
DDX49
DEAD-box helicase 49.
  
 
0.972
NOC4L
Nucleolar complex associated 4 homolog.
   
 0.968
UTP20
UTP20 small subunit processome component.
   
 0.967
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.