STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMGB3High mobility group box 3. (202 aa)    
Predicted Functional Partners:
ACTR8
Actin related protein 8.
    
 0.799
GTF2H1
General transcription factor IIH subunit 1.
    
 0.798
ERCC3
ERCC excision repair 3, TFIIH core complex helicase subunit.
   
 0.795
LOC101880783
Beclin 1.
    
 0.784
RUVBL1
RuvB like AAA ATPase 1.
    
 0.766
H2AZ1
Histone H2A.Z.
   
 0.762
POLRMT
RNA polymerase mitochondrial.
    
 0.759
ACTL6A
Actin like 6A.
   
 0.748
ACTR5
Actin related protein 5.
    
 0.746
LOC101872547
General transcription factor IIH subunit 2.
    
 0.744
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.