A0A165ZFM0 protein (Sistotremastrum suecicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A165ZFM0

Uncharacterized protein. (377 aa)

Predicted Functional Partners:

A0A166A6P8

0.629

A0A166CQ09

0.629

A0A165Y970

0.614

A0A166F6U4

0.609

A0A166H3T2

0.609

A0A166GPE8

0.559

A0A165YI22

0.524

A0A166AC66

0.524

A0A166CS49

0.524

A0A166FFW6

0.524

Your Current Organism:

Sistotremastrum suecicum

NCBI taxonomy Id: 1314776
Other names: S. suecicum HHB10207 ss-3, Sistotremastrum suecicum HHB10207 ss-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A165Y970	A0A165ZFM0	Nucleic acid-binding protein.	Uncharacterized protein.	0.614
A0A165Y970	A0A166CQ09	Nucleic acid-binding protein.	Anti-silence-domain-containing protein.	0.443
A0A165YI22	A0A165ZFM0	CRAL-TRIO domain-containing protein.	Uncharacterized protein.	0.524
A0A165YI22	A0A166CS49	CRAL-TRIO domain-containing protein.	CRAL/TRIO domain-containing protein.	0.695
A0A165ZFM0	A0A165Y970	Uncharacterized protein.	Nucleic acid-binding protein.	0.614
A0A165ZFM0	A0A165YI22	Uncharacterized protein.	CRAL-TRIO domain-containing protein.	0.524
A0A165ZFM0	A0A166A6P8	Uncharacterized protein.	Protein HIR; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.629
A0A165ZFM0	A0A166AC66	Uncharacterized protein.	CRAL/TRIO domain-containing protein.	0.524
A0A165ZFM0	A0A166CQ09	Uncharacterized protein.	Anti-silence-domain-containing protein.	0.629
A0A165ZFM0	A0A166CS49	Uncharacterized protein.	CRAL/TRIO domain-containing protein.	0.524
A0A165ZFM0	A0A166F6U4	Uncharacterized protein.	Uncharacterized protein.	0.609
A0A165ZFM0	A0A166FFW6	Uncharacterized protein.	CRAL/TRIO domain-containing protein.	0.524
A0A165ZFM0	A0A166GPE8	Uncharacterized protein.	FSH1-domain-containing protein.	0.559
A0A165ZFM0	A0A166H3T2	Uncharacterized protein.	Ferredoxin.	0.609
A0A166A6P8	A0A165ZFM0	Protein HIR; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	Uncharacterized protein.	0.629
A0A166A6P8	A0A166CQ09	Protein HIR; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	Anti-silence-domain-containing protein.	0.997
A0A166AC66	A0A165ZFM0	CRAL/TRIO domain-containing protein.	Uncharacterized protein.	0.524
A0A166AC66	A0A166CS49	CRAL/TRIO domain-containing protein.	CRAL/TRIO domain-containing protein.	0.529
A0A166CQ09	A0A165Y970	Anti-silence-domain-containing protein.	Nucleic acid-binding protein.	0.443
A0A166CQ09	A0A165ZFM0	Anti-silence-domain-containing protein.	Uncharacterized protein.	0.629