A0A166B5A6 protein (Sistotremastrum suecicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A166B5A6

Uncharacterized protein. (789 aa)

Predicted Functional Partners:

A0A166D272

0.819

A0A166EII7

0.738

A0A166II63

0.706

A0A166IPP9

0.659

A0A166BAZ2

0.658

A0A166FY16

0.650

A0A166BNK6

0.649

A0A166BV90

0.649

A0A166DK49

0.649

A0A166FZL3

0.649

Your Current Organism:

Sistotremastrum suecicum

NCBI taxonomy Id: 1314776
Other names: S. suecicum HHB10207 ss-3, Sistotremastrum suecicum HHB10207 ss-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A166B5A6	A0A166BAZ2	Uncharacterized protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.658
A0A166B5A6	A0A166BNK6	Uncharacterized protein.	Small-subunit processome.	0.649
A0A166B5A6	A0A166BV90	Uncharacterized protein.	Nep1-domain-containing protein.	0.649
A0A166B5A6	A0A166D272	Uncharacterized protein.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.819
A0A166B5A6	A0A166DK49	Uncharacterized protein.	WD40 repeat-like protein.	0.649
A0A166B5A6	A0A166EII7	Uncharacterized protein.	SPX domain-containing protein.	0.738
A0A166B5A6	A0A166FY16	Uncharacterized protein.	Nop domain-containing protein.	0.650
A0A166B5A6	A0A166FZL3	Uncharacterized protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.649
A0A166B5A6	A0A166II63	Uncharacterized protein.	Pyridoxamine 5'-phosphate oxidase.	0.706
A0A166B5A6	A0A166IPP9	Uncharacterized protein.	NUC189-domain-containing protein.	0.659
A0A166BAZ2	A0A166B5A6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	Uncharacterized protein.	0.658
A0A166BAZ2	A0A166BNK6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	Small-subunit processome.	0.985
A0A166BAZ2	A0A166BV90	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	Nep1-domain-containing protein.	0.987
A0A166BAZ2	A0A166DK49	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	WD40 repeat-like protein.	0.987
A0A166BAZ2	A0A166FY16	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	Nop domain-containing protein.	0.986
A0A166BAZ2	A0A166FZL3	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
A0A166BAZ2	A0A166IPP9	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	NUC189-domain-containing protein.	0.980
A0A166BNK6	A0A166B5A6	Small-subunit processome.	Uncharacterized protein.	0.649
A0A166BNK6	A0A166BAZ2	Small-subunit processome.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.985
A0A166BNK6	A0A166BV90	Small-subunit processome.	Nep1-domain-containing protein.	0.993