STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A166BU11HTH La-type RNA-binding domain-containing protein. (1020 aa)    
Predicted Functional Partners:
A0A166GUQ0
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 
 0.760
A0A165YZQ5
ARM repeat-containing protein.
   
 
 0.700
A0A166JE48
Putative rRNA pseudouridine synthase.
   
 
 0.676
A0A166AKL8
Uncharacterized protein.
   
 
 0.674
A0A166IAI0
Uncharacterized protein.
   
 
 0.622
A0A166DL49
P-loop containing nucleoside triphosphate hydrolase protein.
   
 
 0.600
A0A166DLS0
P-loop containing nucleoside triphosphate hydrolase protein.
   
 
 0.600
A0A166DLT1
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43.
   
 
 0.600
A0A166EYE8
Eukaryotic translation initiation factor 4E class I; Belongs to the eukaryotic initiation factor 4E family.
   
 
 0.583
A0A166ANY6
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
   0.560
Your Current Organism:
Sistotremastrum suecicum
NCBI taxonomy Id: 1314776
Other names: S. suecicum HHB10207 ss-3, Sistotremastrum suecicum HHB10207 ss-3
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