STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A166FZZ8Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (415 aa)    
Predicted Functional Partners:
A0A166GBY9
WD40 repeat-like protein.
    
 
 0.936
A0A166J3D3
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 
 0.928
A0A166BAZ2
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
 
 0.922
A0A166J3H4
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.917
A0A166G3J2
Ribosomal protein S1.
    
 
 0.912
A0A165Z9W6
Putative RPS17B-ribosomal protein S17.e.B.
   
 
 0.910
A0A166I6I2
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 
 0.907
A0A166ICB2
Ribosomal protein S12/S23; Belongs to the universal ribosomal protein uS12 family.
    
 
 0.903
A0A166D9Z2
Ribosomal protein L38e; Belongs to the eukaryotic ribosomal protein eL38 family.
    
 
 0.902
A0A166HZF5
Putative ribosomal protein S12, cytosolic; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.901
Your Current Organism:
Sistotremastrum suecicum
NCBI taxonomy Id: 1314776
Other names: S. suecicum HHB10207 ss-3, Sistotremastrum suecicum HHB10207 ss-3
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