A0A166J7X3 protein (Sistotremastrum suecicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A166J7X3

Arrestin_C domain-containing protein. (883 aa)

Predicted Functional Partners:

A0A165XIK1

0.754

A0A166BSV6

0.754

A0A166JDX0

0.706

A0A166HES3

0.624

A0A166E6T1

0.535

A0A166HZG4

0.535

A0A166FB64

0.527

A0A166D4X7

0.506

A0A166DAF2

0.506

A0A166DAG6

0.506

Your Current Organism:

Sistotremastrum suecicum

NCBI taxonomy Id: 1314776
Other names: S. suecicum HHB10207 ss-3, Sistotremastrum suecicum HHB10207 ss-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A165XIK1	A0A166D4X7	Dehydroquinate synthase-like protein.	Putative phosphoglycerate mutase family protein.	0.596
A0A165XIK1	A0A166DAF2	Dehydroquinate synthase-like protein.	Tryptophan synthase beta subunit-like PLP-dependent enzyme.	0.596
A0A165XIK1	A0A166DAG6	Dehydroquinate synthase-like protein.	Tryptophan synthase beta subunit-like PLP-dependent enzyme.	0.596
A0A165XIK1	A0A166E6T1	Dehydroquinate synthase-like protein.	Acetolactate synthase.	0.724
A0A165XIK1	A0A166HES3	Dehydroquinate synthase-like protein.	Pyruvate decarboxylase.	0.808
A0A165XIK1	A0A166HZG4	Dehydroquinate synthase-like protein.	Thiamin diphosphate-binding protein; Belongs to the TPP enzyme family.	0.724
A0A165XIK1	A0A166J7X3	Dehydroquinate synthase-like protein.	Arrestin_C domain-containing protein.	0.754
A0A166BSV6	A0A166D4X7	Dehydroquinate synthase-like protein.	Putative phosphoglycerate mutase family protein.	0.596
A0A166BSV6	A0A166DAF2	Dehydroquinate synthase-like protein.	Tryptophan synthase beta subunit-like PLP-dependent enzyme.	0.596
A0A166BSV6	A0A166DAG6	Dehydroquinate synthase-like protein.	Tryptophan synthase beta subunit-like PLP-dependent enzyme.	0.596
A0A166BSV6	A0A166E6T1	Dehydroquinate synthase-like protein.	Acetolactate synthase.	0.724
A0A166BSV6	A0A166HES3	Dehydroquinate synthase-like protein.	Pyruvate decarboxylase.	0.841
A0A166BSV6	A0A166HZG4	Dehydroquinate synthase-like protein.	Thiamin diphosphate-binding protein; Belongs to the TPP enzyme family.	0.724
A0A166BSV6	A0A166J7X3	Dehydroquinate synthase-like protein.	Arrestin_C domain-containing protein.	0.754
A0A166D4X7	A0A165XIK1	Putative phosphoglycerate mutase family protein.	Dehydroquinate synthase-like protein.	0.596
A0A166D4X7	A0A166BSV6	Putative phosphoglycerate mutase family protein.	Dehydroquinate synthase-like protein.	0.596
A0A166D4X7	A0A166E6T1	Putative phosphoglycerate mutase family protein.	Acetolactate synthase.	0.725
A0A166D4X7	A0A166HZG4	Putative phosphoglycerate mutase family protein.	Thiamin diphosphate-binding protein; Belongs to the TPP enzyme family.	0.704
A0A166D4X7	A0A166J7X3	Putative phosphoglycerate mutase family protein.	Arrestin_C domain-containing protein.	0.506
A0A166DAF2	A0A165XIK1	Tryptophan synthase beta subunit-like PLP-dependent enzyme.	Dehydroquinate synthase-like protein.	0.596