A0A166ACW4 protein (Exidia glandulosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A166ACW4

Carbohydrate-binding module family 1 protein. (342 aa)

Predicted Functional Partners:

A0A165PM30

0.808

A0A165CTF0

0.807

A0A166BUE9

0.796

A0A165M9J5

0.795

A0A165L177

0.773

A0A165IEW5

0.768

A0A165BAI5

0.765

A0A165GH25

0.765

A0A165IHN1

0.765

A0A165QLT9

0.765

Your Current Organism:

Exidia glandulosa

NCBI taxonomy Id: 1314781
Other names: E. glandulosa HHB12029, Exidia glandulosa HHB12029

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A165BAI5	A0A165CTF0	RPB5 subunit of DNA-directed RNA polymerase.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.847
A0A165BAI5	A0A165GH25	RPB5 subunit of DNA-directed RNA polymerase.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
A0A165BAI5	A0A165IEW5	RPB5 subunit of DNA-directed RNA polymerase.	RPOL4c domain-containing protein.	0.999
A0A165BAI5	A0A165IHN1	RPB5 subunit of DNA-directed RNA polymerase.	Uncharacterized protein.	0.999
A0A165BAI5	A0A165L177	RPB5 subunit of DNA-directed RNA polymerase.	Uncharacterized protein.	0.999
A0A165BAI5	A0A165M9J5	RPB5 subunit of DNA-directed RNA polymerase.	Subunit common to RNA polymerase I.	0.999
A0A165BAI5	A0A165QLT9	RPB5 subunit of DNA-directed RNA polymerase.	RBP11-like subunits of RNA polymerase.	0.999
A0A165BAI5	A0A166ACW4	RPB5 subunit of DNA-directed RNA polymerase.	Carbohydrate-binding module family 1 protein.	0.765
A0A165BAI5	A0A166BUE9	RPB5 subunit of DNA-directed RNA polymerase.	Insert subdomain of RNA polymerase alpha subunit.	0.999
A0A165CTF0	A0A165BAI5	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	RPB5 subunit of DNA-directed RNA polymerase.	0.847
A0A165CTF0	A0A165PM30	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Actin-like ATPase domain-containing protein; Belongs to the actin family.	0.998
A0A165CTF0	A0A166ACW4	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Carbohydrate-binding module family 1 protein.	0.807
A0A165CTF0	A0A166BUE9	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Insert subdomain of RNA polymerase alpha subunit.	0.579
A0A165GH25	A0A165BAI5	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	RPB5 subunit of DNA-directed RNA polymerase.	0.999
A0A165GH25	A0A165IEW5	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	RPOL4c domain-containing protein.	0.999
A0A165GH25	A0A165IHN1	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.999
A0A165GH25	A0A165L177	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.999
A0A165GH25	A0A165M9J5	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Subunit common to RNA polymerase I.	0.999
A0A165GH25	A0A165QLT9	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	RBP11-like subunits of RNA polymerase.	0.999
A0A165GH25	A0A166ACW4	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Carbohydrate-binding module family 1 protein.	0.765