STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1Y7H0Ribonuclease H-like protein. (469 aa)    
Predicted Functional Partners:
A0A1Y1YB15
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.809
A0A1Y1YLI2
P-loop containing nucleoside triphosphate hydrolase protein.
    
 0.805
A0A1Y1ZAB0
P-loop containing nucleoside triphosphate hydrolase protein.
    
 0.805
A0A1Y1Y9K1
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.783
A0A1Y1Z1L0
Putative DNA repair protein Mus81.
    
 0.777
A0A1Y1WVL5
Uncharacterized protein.
    
 0.775
A0A1Y1Z967
Uncharacterized protein.
    
 0.775
A0A1Y1YCQ7
Small nuclear ribonucleoprotein G.
    
  0.747
A0A1Y1Y1K1
Uncharacterized protein.
   
 0.744
A0A1Y1ZCJ6
NADH-ubiquinone oxidoreductase; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
   
 
 0.703
Your Current Organism:
Basidiobolus meristosporus
NCBI taxonomy Id: 1314790
Other names: B. meristosporus CBS 931.73, Basidiobolus meristosporus CBS 931.73
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