STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1YBR7SPRY-domain-containing protein. (509 aa)    
Predicted Functional Partners:
A0A1Y1X8G8
RanBP2-type domain-containing protein.
   
 0.728
A0A1Y1XWS8
Nuclear cap-binding protein subunit 2.
    
  0.723
A0A1Y1Z8A0
CSD-domain-containing protein.
    
 0.658
A0A1Y1ZD95
CSD-domain-containing protein.
    
 0.658
A0A1Y1Z7A9
ARM repeat-containing protein.
   
 0.651
A0A1Y1ZCU5
RNA-binding domain-containing protein.
   
 0.646
A0A1Y1ZAE5
RNA polymerase Rpb6.
     
 0.644
A0A1Y1XX11
Putative RNA polymerases L.
    
  0.619
A0A1Y1YHC4
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
  0.616
A0A1Y1Z338
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
  0.616
Your Current Organism:
Basidiobolus meristosporus
NCBI taxonomy Id: 1314790
Other names: B. meristosporus CBS 931.73, Basidiobolus meristosporus CBS 931.73
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