A0A1Y1YEG8 protein (Basidiobolus meristosporus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y1YEG8

Uncharacterized protein. (1293 aa)

Predicted Functional Partners:

A0A1Y1X4P4

0.686

A0A1Y1Y7M0

0.617

A0A1Y1Z2S6

0.617

A0A1Y1Z409

0.617

A0A1Y1YKP3

0.610

A0A1Y1Z6M8

0.593

A0A1Y1XVM7

0.587

A0A1Y1Y0G9

0.587

A0A1Y1Z0M8

0.587

A0A1Y1Y2K0

0.570

Your Current Organism:

Basidiobolus meristosporus

NCBI taxonomy Id: 1314790
Other names: B. meristosporus CBS 931.73, Basidiobolus meristosporus CBS 931.73

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y1X4P4	A0A1Y1XVM7	Synaptobrevin-like protein ykt6; Belongs to the synaptobrevin family.	t-SNARE coiled-coil homology domain-containing protein.	0.978
A0A1Y1X4P4	A0A1Y1Y0G9	Synaptobrevin-like protein ykt6; Belongs to the synaptobrevin family.	t-SNARE coiled-coil homology domain-containing protein.	0.978
A0A1Y1X4P4	A0A1Y1YEG8	Synaptobrevin-like protein ykt6; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.686
A0A1Y1X4P4	A0A1Y1YKP3	Synaptobrevin-like protein ykt6; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.446
A0A1Y1X4P4	A0A1Y1Z0M8	Synaptobrevin-like protein ykt6; Belongs to the synaptobrevin family.	Phox-like protein.	0.995
A0A1Y1X4P4	A0A1Y1Z6M8	Synaptobrevin-like protein ykt6; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.942
A0A1Y1XVM7	A0A1Y1X4P4	t-SNARE coiled-coil homology domain-containing protein.	Synaptobrevin-like protein ykt6; Belongs to the synaptobrevin family.	0.978
A0A1Y1XVM7	A0A1Y1YEG8	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.587
A0A1Y1XVM7	A0A1Y1Z0M8	t-SNARE coiled-coil homology domain-containing protein.	Phox-like protein.	0.735
A0A1Y1XVM7	A0A1Y1Z6M8	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.571
A0A1Y1Y0G9	A0A1Y1X4P4	t-SNARE coiled-coil homology domain-containing protein.	Synaptobrevin-like protein ykt6; Belongs to the synaptobrevin family.	0.978
A0A1Y1Y0G9	A0A1Y1YEG8	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.587
A0A1Y1Y0G9	A0A1Y1Z0M8	t-SNARE coiled-coil homology domain-containing protein.	Phox-like protein.	0.735
A0A1Y1Y0G9	A0A1Y1Z6M8	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.571
A0A1Y1Y2K0	A0A1Y1YEG8	Alba domain-containing protein.	Uncharacterized protein.	0.570
A0A1Y1Y7M0	A0A1Y1YEG8	Sorting nexin-3.	Uncharacterized protein.	0.617
A0A1Y1YEG8	A0A1Y1X4P4	Uncharacterized protein.	Synaptobrevin-like protein ykt6; Belongs to the synaptobrevin family.	0.686
A0A1Y1YEG8	A0A1Y1XVM7	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.587
A0A1Y1YEG8	A0A1Y1Y0G9	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.587
A0A1Y1YEG8	A0A1Y1Y2K0	Uncharacterized protein.	Alba domain-containing protein.	0.570