A0A1Y1YFW8 protein (Basidiobolus meristosporus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y1YFW8

RGS domain-containing protein. (437 aa)

Predicted Functional Partners:

A0A1Y1XUW7

0.639

A0A1Y1XYV2

0.639

A0A1Y1Y6X0

0.639

A0A1Y1YI04

0.639

A0A1Y1YJR1

0.639

A0A1Y1YUK0

0.639

A0A1Y1Z0Y9

0.639

A0A1Y1Z522

0.639

A0A1Y1XCR4

0.632

A0A1Y1Y0T3

0.564

Your Current Organism:

Basidiobolus meristosporus

NCBI taxonomy Id: 1314790
Other names: B. meristosporus CBS 931.73, Basidiobolus meristosporus CBS 931.73

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y1XCR4	A0A1Y1XUW7	Uncharacterized protein.	Guanine nucleotide-binding protein, beta subunit.	0.898
A0A1Y1XCR4	A0A1Y1Y6X0	Uncharacterized protein.	Guanine nucleotide-binding protein, beta subunit.	0.898
A0A1Y1XCR4	A0A1Y1YFW8	Uncharacterized protein.	RGS domain-containing protein.	0.632
A0A1Y1XCR4	A0A1Y1YJR1	Uncharacterized protein.	Guanine nucleotide-binding protein, beta subunit.	0.898
A0A1Y1XCR4	A0A1Y1Z522	Uncharacterized protein.	Guanine nucleotide-binding protein, beta subunit.	0.898
A0A1Y1XUW7	A0A1Y1XCR4	Guanine nucleotide-binding protein, beta subunit.	Uncharacterized protein.	0.898
A0A1Y1XUW7	A0A1Y1XYV2	Guanine nucleotide-binding protein, beta subunit.	Pkinase-domain-containing protein; Belongs to the protein kinase superfamily.	0.497
A0A1Y1XUW7	A0A1Y1YFW8	Guanine nucleotide-binding protein, beta subunit.	RGS domain-containing protein.	0.639
A0A1Y1XUW7	A0A1Y1YI04	Guanine nucleotide-binding protein, beta subunit.	Pkinase-domain-containing protein; Belongs to the protein kinase superfamily.	0.497
A0A1Y1XUW7	A0A1Y1YUK0	Guanine nucleotide-binding protein, beta subunit.	Glycogen synthase kinase 3; Belongs to the protein kinase superfamily.	0.497
A0A1Y1XUW7	A0A1Y1Z0Y9	Guanine nucleotide-binding protein, beta subunit.	Pkinase-domain-containing protein; Belongs to the protein kinase superfamily.	0.497
A0A1Y1XYV2	A0A1Y1XUW7	Pkinase-domain-containing protein; Belongs to the protein kinase superfamily.	Guanine nucleotide-binding protein, beta subunit.	0.497
A0A1Y1XYV2	A0A1Y1Y0T3	Pkinase-domain-containing protein; Belongs to the protein kinase superfamily.	Uridine-cytidine kinase 2-B.	0.863
A0A1Y1XYV2	A0A1Y1Y6X0	Pkinase-domain-containing protein; Belongs to the protein kinase superfamily.	Guanine nucleotide-binding protein, beta subunit.	0.497
A0A1Y1XYV2	A0A1Y1YFW8	Pkinase-domain-containing protein; Belongs to the protein kinase superfamily.	RGS domain-containing protein.	0.639
A0A1Y1XYV2	A0A1Y1YJR1	Pkinase-domain-containing protein; Belongs to the protein kinase superfamily.	Guanine nucleotide-binding protein, beta subunit.	0.497
A0A1Y1XYV2	A0A1Y1Z522	Pkinase-domain-containing protein; Belongs to the protein kinase superfamily.	Guanine nucleotide-binding protein, beta subunit.	0.497
A0A1Y1Y0T3	A0A1Y1XYV2	Uridine-cytidine kinase 2-B.	Pkinase-domain-containing protein; Belongs to the protein kinase superfamily.	0.863
A0A1Y1Y0T3	A0A1Y1YFW8	Uridine-cytidine kinase 2-B.	RGS domain-containing protein.	0.564
A0A1Y1Y0T3	A0A1Y1YI04	Uridine-cytidine kinase 2-B.	Pkinase-domain-containing protein; Belongs to the protein kinase superfamily.	0.863