A0A1Y1Z5D8 protein (Basidiobolus meristosporus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y1Z5D8

Nucleic acid-binding protein. (148 aa)

Predicted Functional Partners:

A0A1Y1YMY0

0.988

A0A1Y1Y440

0.921

A0A1Y1YS61

0.823

A0A1Y1Y7Q5

0.814

A0A1Y1Y1C8

0.746

A0A1Y1YFT2

0.739

A0A1Y1X8J4

0.714

A0A1Y1XUU5

0.711

A0A1Y1YGV7

0.711

A0A1Y1YS75

0.711

Your Current Organism:

Basidiobolus meristosporus

NCBI taxonomy Id: 1314790
Other names: B. meristosporus CBS 931.73, Basidiobolus meristosporus CBS 931.73

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y1X8J4	A0A1Y1XUU5	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Cleavage and polyadenylation specificity factor subunit 2.	0.762
A0A1Y1X8J4	A0A1Y1Y1C8	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.933
A0A1Y1X8J4	A0A1Y1Y440	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	VWFA domain-containing protein.	0.934
A0A1Y1X8J4	A0A1Y1Y7Q5	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Beta-Casp domain-containing protein.	0.936
A0A1Y1X8J4	A0A1Y1YGV7	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	DRMBL-domain-containing protein.	0.762
A0A1Y1X8J4	A0A1Y1YMY0	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.989
A0A1Y1X8J4	A0A1Y1YS61	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Beta-Casp domain-containing protein.	0.958
A0A1Y1X8J4	A0A1Y1YS75	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Metallo-hydrolase/oxidoreductase.	0.763
A0A1Y1X8J4	A0A1Y1Z5D8	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Nucleic acid-binding protein.	0.714
A0A1Y1XUU5	A0A1Y1X8J4	Cleavage and polyadenylation specificity factor subunit 2.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.762
A0A1Y1XUU5	A0A1Y1Y1C8	Cleavage and polyadenylation specificity factor subunit 2.	Uncharacterized protein.	0.902
A0A1Y1XUU5	A0A1Y1Y440	Cleavage and polyadenylation specificity factor subunit 2.	VWFA domain-containing protein.	0.839
A0A1Y1XUU5	A0A1Y1Y7Q5	Cleavage and polyadenylation specificity factor subunit 2.	Beta-Casp domain-containing protein.	0.976
A0A1Y1XUU5	A0A1Y1YFT2	Cleavage and polyadenylation specificity factor subunit 2.	Ssu72-like protein.	0.995
A0A1Y1XUU5	A0A1Y1YGV7	Cleavage and polyadenylation specificity factor subunit 2.	DRMBL-domain-containing protein.	0.491
A0A1Y1XUU5	A0A1Y1YMY0	Cleavage and polyadenylation specificity factor subunit 2.	Uncharacterized protein.	0.916
A0A1Y1XUU5	A0A1Y1YS75	Cleavage and polyadenylation specificity factor subunit 2.	Metallo-hydrolase/oxidoreductase.	0.999
A0A1Y1XUU5	A0A1Y1Z5D8	Cleavage and polyadenylation specificity factor subunit 2.	Nucleic acid-binding protein.	0.711
A0A1Y1Y1C8	A0A1Y1X8J4	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.933
A0A1Y1Y1C8	A0A1Y1XUU5	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.902