STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1Z7C9FCP1 homology domain-containing protein. (354 aa)    
Predicted Functional Partners:
A0A1Y1ZAL4
Uncharacterized protein.
    
 0.964
A0A1Y1YHC4
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.963
A0A1Y1Z338
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.963
A0A1Y1XZK5
Uncharacterized protein.
    
 0.939
A0A1Y1XVQ8
Insert subdomain of RNA polymerase alpha subunit.
    
 0.929
A0A1Y1Z7C8
RPOLD domain-containing protein.
    
 0.929
A0A1Y1XX11
Putative RNA polymerases L.
    
 0.915
K493DRAFT_9798
RPOL4c domain-containing protein.
    
 0.887
A0A1Y1YB56
DNA-directed RNA polymerase II subunit RPB4.
    
 0.887
A0A1Y1ZAE5
RNA polymerase Rpb6.
   
 0.877
Your Current Organism:
Basidiobolus meristosporus
NCBI taxonomy Id: 1314790
Other names: B. meristosporus CBS 931.73, Basidiobolus meristosporus CBS 931.73
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