A0A1B7NDW7 protein (Rhizopogon vinicolor) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1B7NDW7

Mitochondrial intermediate peptidase. (770 aa)

Predicted Functional Partners:

A0A1B7N2D1

0.581

A0A1B7N6V4

0.570

A0A1B7NAD8

0.535

A0A1B7N5E6

0.518

A0A1B7N797

0.517

A0A1B7NA18

0.517

A0A1B7NHI5

0.515

A0A1B7MTV8

0.514

A0A1B7NGX9

0.513

A0A1B7MKC0

0.511

Your Current Organism:

Rhizopogon vinicolor

NCBI taxonomy Id: 1314800
Other names: R. vinicolor AM-OR11-026, Rhizopogon vinicolor AM-OR11-026

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1B7MKC0	A0A1B7NA18	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.416
A0A1B7MKC0	A0A1B7NDW7	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Mitochondrial intermediate peptidase.	0.511
A0A1B7MTV8	A0A1B7NA18	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.440
A0A1B7MTV8	A0A1B7NAD8	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Prolidase.	0.543
A0A1B7MTV8	A0A1B7NDW7	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Mitochondrial intermediate peptidase.	0.514
A0A1B7MTV8	A0A1B7NHI5	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	ATP-dependent metallopeptidase Hfl.	0.660
A0A1B7N2D1	A0A1B7N5E6	Frataxin.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.783
A0A1B7N2D1	A0A1B7N797	Frataxin.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.831
A0A1B7N2D1	A0A1B7NDW7	Frataxin.	Mitochondrial intermediate peptidase.	0.581
A0A1B7N5E6	A0A1B7N2D1	Uncharacterized protein; Belongs to the peptidase M16 family.	Frataxin.	0.783
A0A1B7N5E6	A0A1B7N6V4	Uncharacterized protein; Belongs to the peptidase M16 family.	Peptidase M24.	0.588
A0A1B7N5E6	A0A1B7N797	Uncharacterized protein; Belongs to the peptidase M16 family.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.998
A0A1B7N5E6	A0A1B7NA18	Uncharacterized protein; Belongs to the peptidase M16 family.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.436
A0A1B7N5E6	A0A1B7NDW7	Uncharacterized protein; Belongs to the peptidase M16 family.	Mitochondrial intermediate peptidase.	0.518
A0A1B7N5E6	A0A1B7NHI5	Uncharacterized protein; Belongs to the peptidase M16 family.	ATP-dependent metallopeptidase Hfl.	0.848
A0A1B7N6V4	A0A1B7N5E6	Peptidase M24.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.588
A0A1B7N6V4	A0A1B7N797	Peptidase M24.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.570
A0A1B7N6V4	A0A1B7NDW7	Peptidase M24.	Mitochondrial intermediate peptidase.	0.570
A0A1B7N797	A0A1B7N2D1	Uncharacterized protein; Belongs to the peptidase M16 family.	Frataxin.	0.831
A0A1B7N797	A0A1B7N5E6	Uncharacterized protein; Belongs to the peptidase M16 family.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.998