STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK24144.1COG2124 Cytochrome P450. (412 aa)    
Predicted Functional Partners:
AMK25933.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 0.994
AMK24143.1
Ferredoxin, 2Fe-2S; COG0633 Ferredoxin.
 
 0.930
AMK21493.1
Ferredoxin; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 0.880
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.806
AMK25150.1
COG0633 Ferredoxin.
 
 0.738
AMK25662.1
COG0633 Ferredoxin.
 
 0.730
AMK24915.1
COG0633 Ferredoxin.
 
 0.711
AMK25330.1
ferredoxin--NAD(+) reductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
  
 0.694
AMK22723.1
ferredoxin--NAD(+) reductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
  
 0.660
AMK25586.1
4-hydroxyacetophenone monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.
 
 
 0.636
Your Current Organism:
Sphingobium sp. TKS
NCBI taxonomy Id: 1315974
Other names: S. sp. TKS
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