STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PENSUB_10438Uncharacterized protein. (399 aa)    
Predicted Functional Partners:
PENSUB_8249
Chromosome transmission fidelity protein 18.
   
 0.999
PENSUB_10778
Replication factor C subunit 5.
   
 0.989
PENSUB_253
Uncharacterized protein.
   
 0.981
PENSUB_254
Uncharacterized protein.
   
 0.973
PENSUB_11394
DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.
   
 0.973
PENSUB_9213
Replication factor C subunit 4.
   
 0.961
PENSUB_10301
Replication factor C subunit 2.
   
 0.960
PENSUB_1990
Replication factor C subunit 3.
   
 0.917
PENSUB_1989
Replication factor C subunit 3.
   
 0.917
PENSUB_953
DNA polymerase.
   
 0.906
Your Current Organism:
Penicillium subrubescens
NCBI taxonomy Id: 1316194
Other names: CBS 132785, CBS H-21029, DTO 188-D6, IBT 31985, P. subrubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.