STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO4_03180COG2939 Carboxypeptidase C (cathepsin A). (532 aa)    
Predicted Functional Partners:
ATO4_23412
COG0666 FOG: Ankyrin repeat.
    
 0.805
ATO4_22127
Peptidoglycan-binding domain 1 protein; COG0790 FOG: TPR repeat, SEL1 subfamily.
    
 
 0.491
ATO4_03185
Hypothetical protein.
       0.470
ATO4_08140
Peptidase S8/S53 subtilisin kexin sedolisin; COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family.
  
 
 0.434
Your Current Organism:
Aurantimonas sp. 22II1619i
NCBI taxonomy Id: 1317114
Other names: A. sp. 22II-16-19i, Aurantimonas sp. 22II-16-19i
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.