STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO4_10291Hypothetical protein; COG2319 FOG: WD40 repeat. (325 aa)    
Predicted Functional Partners:
ATO4_03445
Hypothetical protein; COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing.
    
 0.989
alaS
alanyl-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.987
ATO4_16320
COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
   
 0.979
ATO4_23412
COG0666 FOG: Ankyrin repeat.
    
 0.973
ATO4_09187
Hypothetical protein.
  
 0.939
ATO4_04617
Hypothetical protein; COG0457 FOG: TPR repeat.
  
 
 0.933
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.932
ATO4_10296
Cobalamin synthesis protein; COG0523 Putative GTPases (G3E family).
 
     0.926
ATO4_09047
Von Willebrand factor type A; COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; overlaps another CDS with the same product name.
    
 0.924
ATO4_09052
Hypothetical protein; COG0457 FOG: TPR repeat.
    
 0.924
Your Current Organism:
Aurantimonas sp. 22II1619i
NCBI taxonomy Id: 1317114
Other names: A. sp. 22II-16-19i, Aurantimonas sp. 22II-16-19i
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.