STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_00025COG0848 Biopolymer transport protein. (136 aa)    
Predicted Functional Partners:
ATO7_00030
Putative TonB system-dependent transport protein; COG0811 Biopolymer transport proteins.
 
   0.973
ATO7_00035
TonB system biopolymer transport component; COG0811 Biopolymer transport proteins; overlaps another CDS with the same product name.
 
   0.973
ATO7_00050
TonB system biopolymer transport component; COG0811 Biopolymer transport proteins.
 
   0.971
ATO7_00020
Periplasmic protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.953
ATO7_00040
TonB system biopolymer transport component; COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); overlaps another CDS with the same product name.
 
     0.923
ATO7_02430
MotA/TolQ/ExbB proton channel; COG0811 Biopolymer transport proteins.
 
   0.887
ATO7_06375
Putative TonB system-dependent transport protein; COG0811 Biopolymer transport proteins.
 
   0.887
ATO7_02425
COG0811 Biopolymer transport proteins.
 
   0.885
ATO7_06380
Putative Tol protein; COG0811 Biopolymer transport proteins.
 
   0.885
ATO7_13443
TonB system transport protein ExbB2; COG0811 Biopolymer transport proteins.
  
   0.885
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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