STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_00085enoyl-CoA hydratase/isomerase family protein; COG1024 Enoyl-CoA hydratase/carnithine racemase. (277 aa)    
Predicted Functional Partners:
ATO7_08002
Sensor protein GacS; COG0642 Signal transduction histidine kinase.
    
  0.956
ATO7_11778
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 0.949
ATO7_05655
COG0642 Signal transduction histidine kinase.
   
 0.948
ATO7_08962
Histidine kinase; COG2202 FOG: PAS/PAC domain.
    
 0.945
ATO7_09872
Sensory box histidine kinase/response regulator; COG0591 Na+/proline symporter.
   
 0.945
ATO7_12248
Multi-sensor hybrid histidine kinase; COG2202 FOG: PAS/PAC domain.
    
 0.945
ATO7_10612
Modular polyketide synthase; COG2070 Dioxygenases related to 2-nitropropane dioxygenase.
  
 0.918
ATO7_10347
Diguanylate cyclase/phosphodiesterase; COG3292 Predicted periplasmic ligand-binding sensor domain.
    
  0.890
ATO7_07322
Carbamoyl-phosphate synthase L chain ATP-binding protein.
  
 0.850
ATO7_04370
COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
  
  0.804
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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