STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_00775COG1305 Transglutaminase-like enzymes, putative cysteine proteases. (654 aa)    
Predicted Functional Partners:
ATO7_00770
Hypothetical protein; COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
  
 0.996
ATO7_00765
COG0714 MoxR-like ATPases.
 
     0.941
ATO7_14808
COG1652 Uncharacterized protein containing LysM domain.
  
     0.751
ATO7_15028
Type IV pilus assembly membrane transmembrane protein; COG3167 Tfp pilus assembly protein PilO.
  
     0.741
ATO7_13223
COG3215 Tfp pilus assembly protein PilZ.
 
     0.736
ATO7_15033
COG3166 Tfp pilus assembly protein PilN.
  
     0.728
ATO7_15023
COG3168 Tfp pilus assembly protein PilP.
  
     0.726
ATO7_15038
COG4972 Tfp pilus assembly protein, ATPase PilM.
  
     0.710
ATO7_12623
COG4967 Tfp pilus assembly protein PilV.
  
     0.707
ATO7_15018
Type IV pilus secretin PilQ; COG4796 Type II secretory pathway, component HofQ.
  
     0.689
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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