STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_00880FeS assembly protein SufD; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component. (380 aa)    
Predicted Functional Partners:
ATO7_00870
Cysteine desulfurase activator complex subunit SufB; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
0.999
ATO7_00875
FeS assembly ATPase SufC; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
 
 0.999
ATO7_00885
SufS subfamily cysteine desulfurase; COG0520 Selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 0.998
ATO7_04280
COG2166 SufE protein probably involved in Fe-S center assembly.
 
 0.868
ATO7_00585
Scaffold protein; COG0822 NifU homolog involved in Fe-S cluster formation.
  
  
 0.865
ATO7_10792
FeS assembly SUF system protein SufT; COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
 
   
 0.792
ATO7_00580
HesB-like protein; Belongs to the HesB/IscA family.
  
 
 0.658
ATO7_00865
Iron sulfur cluster assemblytranscriptional regulator SufA; COG1959 Predicted transcriptional regulator.
 
   
 0.604
ATO7_00890
PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
       0.584
erpA
Iron-sulfur cluster insertion protein ErpA; Required for insertion of 4Fe-4S clusters for at least IspG.
  
 
 0.497
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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