STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_01700Hypothetical protein. (212 aa)    
Predicted Functional Partners:
ATO7_10002
COG4771 Outer membrane receptor for ferrienterochelin and colicins.
  
     0.578
ATO7_13003
COG3203 Outer membrane protein (porin).
  
     0.573
ATO7_14063
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.545
ATO7_13918
Outer membrane receptor, TonB dependent; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.493
ATO7_14208
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.462
ATO7_09322
TonB-dependent receptor, plug; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.457
ATO7_13678
Hypothetical protein; COG4798 Predicted methyltransferase.
  
     0.439
ATO7_08567
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.425
ATO7_01705
Short chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.416
ATO7_00970
Plasmolipin; COG3295 Uncharacterized protein conserved in bacteria.
  
     0.408
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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