STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_01820Acyl-CoA thioester hydrolase ybgC; COG0824 Predicted thioesterase. (140 aa)    
Predicted Functional Partners:
ATO7_10612
Modular polyketide synthase; COG2070 Dioxygenases related to 2-nitropropane dioxygenase.
  
 0.998
ATO7_10607
COG3321 Polyketide synthase modules and related proteins; Belongs to the P-Pant transferase superfamily.
  
 0.874
ATO7_01815
COG0260 Leucyl aminopeptidase; Belongs to the peptidase M17 family.
     
 0.773
ATO7_01810
Lipase; COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold.
       0.697
fadB
Multifunctional fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
  
 
 0.631
ATO7_07722
3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 
 0.631
ATO7_13178
ACP S-malonyltransferase; COG0331 (acyl-carrier-protein) S-malonyltransferase.
   
 0.608
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.526
ATO7_01805
Glyoxalase/bleomycin resistance protein/dioxygenase; COG0346 Lactoylglutathione lyase and related lyases.
       0.481
ATO7_01780
COG2070 Dioxygenases related to 2-nitropropane dioxygenase.
   
  0.477
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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