STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_020253-oxosteroid-delta-1-dehydrogenase; COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit. (574 aa)    
Predicted Functional Partners:
ATO7_08082
COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 0.990
ATO7_08097
COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit.
  
 0.990
ATO7_06095
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
 
 0.977
ATO7_08077
Hypothetical protein.
  
 0.917
ATO7_02030
COG1960 Acyl-CoA dehydrogenases.
 
    0.898
ATO7_07322
Carbamoyl-phosphate synthase L chain ATP-binding protein.
  
 0.893
cysC
Sulfate adenylyltransferase subunit 1; Catalyzes the synthesis of activated sulfate.
    
 0.864
ATO7_10797
Oxidoreductase FAD/FMN-binding protein; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
   
  0.864
ATO7_03495
Steroid delta-isomerase; COG0176 Transaldolase.
  
  
  0.853
ATO7_08092
COG2142 Succinate dehydrogenase, hydrophobic anchor subunit.
  
 0.851
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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