STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_02880COG3220 Uncharacterized protein conserved in bacteria. (228 aa)    
Predicted Functional Partners:
ATO7_02885
Hypothetical protein.
 
  
 0.981
ATO7_02875
Hypothetical protein; COG5572 Predicted integral membrane protein.
 
  
 0.938
ATO7_13743
COG3219 Uncharacterized protein conserved in bacteria.
 
  
 0.832
ATO7_00740
Hypothetical protein.
   
    0.603
ATO7_01255
DoxX family protein; COG2259 Predicted membrane protein.
 
  
 0.550
ATO7_13753
Hypothetical protein.
 
  
 0.498
ATO7_00275
COG4585 Signal transduction histidine kinase.
   
    0.403
ATO7_03225
FHA domain-containing protein; COG1716 FOG: FHA domain.
   
    0.403
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.