STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_03495Steroid delta-isomerase; COG0176 Transaldolase. (122 aa)    
Predicted Functional Partners:
ATO7_03500
LuxR family transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins.
 
     0.880
ATO7_14178
Hypothetical protein; COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
  
  
  0.863
ATO7_02025
3-oxosteroid-delta-1-dehydrogenase; COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
  
  
  0.853
ATO7_01795
CoA-transferase subunit beta; COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
 
  
  0.826
ATO7_08922
Hypothetical protein.
  
  
 0.816
ATO7_01850
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.806
ATO7_01800
CoA-transferase subunit alpha; COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
 
  
  0.799
ATO7_02680
Hypothetical protein.
 
     0.778
ATO7_01715
Short chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
  
  0.772
ATO7_02030
COG1960 Acyl-CoA dehydrogenases.
  
     0.770
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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