STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_03500LuxR family transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins. (402 aa)    
Predicted Functional Partners:
ATO7_03495
Steroid delta-isomerase; COG0176 Transaldolase.
 
     0.880
ATO7_08002
Sensor protein GacS; COG0642 Signal transduction histidine kinase.
     
 0.834
ATO7_02680
Hypothetical protein.
 
     0.773
ATO7_11818
Hypothetical protein.
  
     0.761
ATO7_02030
COG1960 Acyl-CoA dehydrogenases.
  
     0.760
ATO7_01795
CoA-transferase subunit beta; COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
  
     0.754
ATO7_01740
COG1960 Acyl-CoA dehydrogenases.
  
     0.749
ATO7_01850
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.742
ATO7_01515
Hypothetical protein.
  
     0.712
ATO7_01800
CoA-transferase subunit alpha; COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
  
     0.707
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.