STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_03540COG5430 Uncharacterized secreted protein. (165 aa)    
Predicted Functional Partners:
ATO7_03530
COG3121 P pilus assembly protein, chaperone PapD.
 
 
 0.978
ATO7_03535
Fimbrial biogenesis outer membrane usher protein; COG3188 P pilus assembly protein, porin PapC.
 
  
 0.949
ATO7_11913
COG3121 P pilus assembly protein, chaperone PapD.
 
 
 0.864
ATO7_03525
COG5430 Uncharacterized secreted protein.
 
    
0.826
ATO7_11908
Fimbrial biogenesis outer membrane usher protein; COG3188 P pilus assembly protein, porin PapC.
 
  
 0.780
ATO7_12473
Regulatory protein TetR; COG1309 Transcriptional regulator.
  
     0.665
ATO7_03545
COG3644 Uncharacterized protein conserved in bacteria.
 
     0.658
ATO7_08182
Hypothetical protein; COG1858 Cytochrome c peroxidase.
  
     0.561
ATO7_03520
COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase.
       0.532
ATO7_08187
Regulatory protein TetR; COG1309 Transcriptional regulator.
  
     0.498
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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