STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_03995COG3562 Capsule polysaccharide export protein. (417 aa)    
Predicted Functional Partners:
ATO7_15287
COG3524 Capsule polysaccharide export protein.
 
 
 
 0.846
ATO7_15277
Polysialic acid capsule biosynthesis transport protein KpsM; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
   
 0.814
ATO7_15282
Capsular polysaccharide ABC transporter, ATP-binding protein; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
   
 0.802
ATO7_15292
Polysaccharide export protein, polysialic acid transport protein kpsD; COG1596 Periplasmic protein involved in polysaccharide export.
 
   
 0.761
ATO7_08782
PHP domain-containing protein.
  
     0.646
ATO7_03970
Hypothetical protein.
 
     0.560
ATO7_03990
P3 protein; COG0385 Predicted Na+-dependent transporter.
       0.538
ATO7_11193
SH3 type 3 domain-containing protein.
  
     0.522
ATO7_11088
COG2258 Uncharacterized protein conserved in bacteria.
  
     0.501
ATO7_11108
COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
     0.456
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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