STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_04030Hypothetical protein. (454 aa)    
Predicted Functional Partners:
ATO7_04035
Hypothetical protein; COG2234 Predicted aminopeptidases.
       0.773
ATO7_04025
Beta-lactamase family protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
  
    0.513
ATO7_01840
COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
   
 0.423
ATO7_08197
COG3239 Fatty acid desaturase.
  
     0.411
ATO7_14568
Hypothetical protein; COG3687 Predicted metal-dependent hydrolase.
  
     0.410
ATO7_04375
Intradiol ring-cleavage dioxygenase; COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
  
 
 0.407
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.