STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_04230anti-FecI sigma factor FecR; COG3712 Fe2+-dicitrate sensor, membrane component. (308 aa)    
Predicted Functional Partners:
ATO7_04225
ECF subfamily RNA polymerase sigma-24 factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.946
ATO7_04205
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
 
 0.915
ATO7_09792
ECF sigma factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
 0.838
ATO7_04220
COG0810 Periplasmic protein TonB, links inner and outer membranes.
 
 
  0.836
ATO7_12838
COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
 
 
 0.818
ATO7_11073
TonB-dependent siderophore receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
  
 0.687
ATO7_11323
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
  
 0.672
ATO7_04215
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.668
ATO7_08567
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
  
 0.660
ATO7_14063
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
   
 0.656
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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