STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_04265PAS/PAC sensor protein; COG2208 Serine phosphatase RsbU, regulator of sigma subunit. (394 aa)    
Predicted Functional Partners:
ATO7_08002
Sensor protein GacS; COG0642 Signal transduction histidine kinase.
 
 0.997
ATO7_11943
Response regulator receiver; COG2208 Serine phosphatase RsbU, regulator of sigma subunit.
 
 0.995
ATO7_05655
COG0642 Signal transduction histidine kinase.
 
 0.951
ATO7_14883
GacS/BarA family sensor protein; COG0642 Signal transduction histidine kinase.
 
 0.951
ATO7_02295
Flagellar protein FlgJ (peptidoglycan hydrolase); COG3951 Rod binding protein.
   
    0.932
ATO7_03695
PAS domain S-box; COG0642 Signal transduction histidine kinase.
 
  
 0.926
ATO7_04900
PAS/PAC sensor signal transduction histidine kinase; COG2202 FOG: PAS/PAC domain.
  
 
 0.920
ATO7_09872
Sensory box histidine kinase/response regulator; COG0591 Na+/proline symporter.
 
 
 0.902
ATO7_00890
PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
  
 
 0.896
ATO7_09477
Signal transduction protein containing a membrane domain an EAL and a GGDEF domain; COG2199 FOG: GGDEF domain.
  
 
 0.896
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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