STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_04360Beta-lactamase domain-containing protein; COG0491 Zn-dependent hydrolases, including glyoxylases. (305 aa)    
Predicted Functional Partners:
ddpX
D-ala-D-ala dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
       0.773
ATO7_10612
Modular polyketide synthase; COG2070 Dioxygenases related to 2-nitropropane dioxygenase.
   
 0.642
ATO7_14953
Hypothetical protein; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
    
  0.604
ATO7_04370
COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
    0.586
ATO7_11028
Rubredoxin-type Fe(Cys)4 protein; COG1773 Rubredoxin.
    
  0.576
ATO7_04805
LuxR family transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins.
  
 
 
 0.539
ATO7_04350
Hypothetical protein.
       0.538
ATO7_04355
Hypothetical protein.
       0.538
ATO7_07532
Hypothetical protein; COG0625 Glutathione S-transferase.
  
 
   0.516
ATO7_07342
MaoC-like dehydratase.
  
    0.457
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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