STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_04590WecB/TagA/CpsF family exopolysaccharide biosynthesis protein; COG1922 Teichoic acid biosynthesis proteins; Belongs to the glycosyltransferase 26 family. (266 aa)    
Predicted Functional Partners:
ATO7_04575
UDP-phosphate galactose phosphotransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
 0.981
ATO7_04585
COG0438 Glycosyltransferase.
 
 
 0.929
ATO7_04560
COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
    
 0.904
ATO7_04580
COG0615 Cytidylyltransferase.
 
  
 0.848
ATO7_04705
Polysaccharide biosynthesis protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.522
ATO7_07200
Group 1 glycosyl transferase; COG3551 Uncharacterized protein conserved in bacteria.
  
 
 0.514
ATO7_15262
COG0438 Glycosyltransferase.
  
 
 0.497
ATO7_07877
COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
    
 0.452
ATO7_15272
COG1216 Predicted glycosyltransferases.
  
  
 0.429
ATO7_00605
COG1045 Serine acetyltransferase.
    
 0.407
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.