STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_04780Hypothetical protein; COG2199 FOG: GGDEF domain. (347 aa)    
Predicted Functional Partners:
ATO7_14878
Diguanylate cyclase; COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain.
 0.980
ATO7_10347
Diguanylate cyclase/phosphodiesterase; COG3292 Predicted periplasmic ligand-binding sensor domain.
 0.936
ATO7_03420
EAL and cyclic nucleotide-binding domain-containing protein; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
 
 0.917
ATO7_09477
Signal transduction protein containing a membrane domain an EAL and a GGDEF domain; COG2199 FOG: GGDEF domain.
 
0.897
ATO7_00890
PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
 
0.896
ATO7_08002
Sensor protein GacS; COG0642 Signal transduction histidine kinase.
 0.893
ATO7_14883
GacS/BarA family sensor protein; COG0642 Signal transduction histidine kinase.
 0.893
ATO7_01630
Response regulator receiver modulated diguanylate phosphodiesterase; COG0784 FOG: CheY-like receiver.
 0.890
ATO7_05650
cyclic-di-GMP regulatory protein; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
 0.888
ATO7_05655
COG0642 Signal transduction histidine kinase.
 0.877
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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