STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_04885Lipoprotein. (293 aa)    
Predicted Functional Partners:
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.746
cysQ
3'(2'),5'-bisphosphate nucleotidase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family.
       0.726
ATO7_13173
COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
  
     0.697
ATO7_13333
YfaZ family protein.
  
     0.690
ATO7_13163
General secretion pathway protein H; COG2165 Type II secretory pathway, pseudopilin PulG.
  
     0.675
ATO7_01125
General secretion pathway protein C; COG3031 Type II secretory pathway, component PulC.
  
     0.660
ATO7_04870
Hydrolase; COG1011 Predicted hydrolase (HAD superfamily); contains a phosphatase-like domain; HAD-superfamily hydrolase subfamily IA, variant 3.
 
     0.654
ATO7_09202
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.595
ATO7_13153
General secretion pathway protein J; COG4795 Type II secretory pathway, component PulJ.
  
     0.581
ATO7_13158
General secretion pathway protein I; COG2165 Type II secretory pathway, pseudopilin PulG.
  
     0.563
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.