STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_04920Type II secretion system protein; COG2064 Flp pilus assembly protein TadC. (300 aa)    
Predicted Functional Partners:
ATO7_04925
COG4965 Flp pilus assembly protein TadB.
  
 0.997
ATO7_04945
COG3745 Flp pilus assembly protein CpaB.
 
  
 0.991
ATO7_04930
Type II secretion system protein E; COG4962 Flp pilus assembly protein, ATPase CpaF.
 
  
 0.985
ATO7_04935
Response regulator receiver protein; COG4963 Flp pilus assembly protein, ATPase CpaE.
 
  
 0.983
ATO7_04915
COG5010 Flp pilus assembly protein TadD, contains TPR repeats.
 
  
 0.980
ATO7_04940
Type II and III secretion system protein; COG4964 Flp pilus assembly protein, secretin CpaC; Belongs to the bacterial secretin family.
 
  
 0.972
ATO7_04905
COG4655 Predicted membrane protein.
 
  
 0.866
ATO7_04950
COG4961 Flp pilus assembly protein TadG.
  
    0.799
ATO7_08522
COG4655 Predicted membrane protein.
 
  
 0.722
ATO7_04910
Hypothetical protein.
       0.645
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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