STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_05260SMC domain-containing protein; COG3593 Predicted ATP-dependent endonuclease of the OLD family. (644 aa)    
Predicted Functional Partners:
ATO7_05270
Metallophosphoesterase; COG0420 DNA repair exonuclease.
       0.776
ATO7_05265
Hypothetical protein; COG0419 ATPase involved in DNA repair.
       0.774
ATO7_02800
Restriction modification system DNA specificity domain-containing protein; COG0732 Restriction endonuclease S subunits.
  
    0.645
ATO7_16494
Hypothetical protein.
  
    0.600
ATO7_05240
Helicase-like protein; COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
 
    0.466
ATO7_05255
Type III restriction enzyme, res subunit; COG3587 Restriction endonuclease.
 
    0.444
ATO7_05250
Type III restriction-modification system methyltransferase; COG2189 Adenine specific DNA methylase Mod.
 
     0.438
ATO7_02805
N-6 adenine-specific DNA methylase 3; COG0286 Type I restriction-modification system methyltransferase subunit.
  
  
 0.437
ATO7_06275
Hypothetical protein; COG0286 Type I restriction-modification system methyltransferase subunit.
  
  
 0.426
ATO7_05275
Hypothetical protein.
       0.419
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.