Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ATO7_05270 | ATO7_05735 | ATO7_05270 | ATO7_05735 | Metallophosphoesterase; COG0420 DNA repair exonuclease. | Exodeoxyribonuclease IX; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | 0.923 |
| ATO7_05270 | ATO7_06730 | ATO7_05270 | ATO7_06730 | Metallophosphoesterase; COG0420 DNA repair exonuclease. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.635 |
| ATO7_05270 | ATO7_13218 | ATO7_05270 | ATO7_13218 | Metallophosphoesterase; COG0420 DNA repair exonuclease. | DNA-directed DNA polymerase; COG0470 ATPase involved in DNA replication. | 0.773 |
| ATO7_05270 | ATO7_15417 | ATO7_05270 | ATO7_15417 | Metallophosphoesterase; COG0420 DNA repair exonuclease. | COG0514 Superfamily II DNA helicase. | 0.969 |
| ATO7_05270 | polA | ATO7_05270 | ATO7_06745 | Metallophosphoesterase; COG0420 DNA repair exonuclease. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.987 |
| ATO7_05270 | recA | ATO7_05270 | ATO7_05330 | Metallophosphoesterase; COG0420 DNA repair exonuclease. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.845 |
| ATO7_05270 | topA | ATO7_05270 | ATO7_14793 | Metallophosphoesterase; COG0420 DNA repair exonuclease. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.850 |
| ATO7_05735 | ATO7_05270 | ATO7_05735 | ATO7_05270 | Exodeoxyribonuclease IX; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | Metallophosphoesterase; COG0420 DNA repair exonuclease. | 0.923 |
| ATO7_05735 | ATO7_06730 | ATO7_05735 | ATO7_06730 | Exodeoxyribonuclease IX; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.989 |
| ATO7_05735 | ATO7_08452 | ATO7_05735 | ATO7_08452 | Exodeoxyribonuclease IX; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | Metallophosphoesterase; COG0420 DNA repair exonuclease. | 0.923 |
| ATO7_05735 | ATO7_13218 | ATO7_05735 | ATO7_13218 | Exodeoxyribonuclease IX; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | DNA-directed DNA polymerase; COG0470 ATPase involved in DNA replication. | 0.892 |
| ATO7_05735 | ATO7_15417 | ATO7_05735 | ATO7_15417 | Exodeoxyribonuclease IX; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | COG0514 Superfamily II DNA helicase. | 0.974 |
| ATO7_05735 | mutL | ATO7_05735 | ATO7_03305 | Exodeoxyribonuclease IX; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.963 |
| ATO7_05735 | mutS | ATO7_05735 | ATO7_05340 | Exodeoxyribonuclease IX; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.966 |
| ATO7_05735 | polA | ATO7_05735 | ATO7_06745 | Exodeoxyribonuclease IX; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.907 |
| ATO7_05735 | recA | ATO7_05735 | ATO7_05330 | Exodeoxyribonuclease IX; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.914 |
| ATO7_05735 | topA | ATO7_05735 | ATO7_14793 | Exodeoxyribonuclease IX; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.893 |
| ATO7_06730 | ATO7_05270 | ATO7_06730 | ATO7_05270 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Metallophosphoesterase; COG0420 DNA repair exonuclease. | 0.635 |
| ATO7_06730 | ATO7_05735 | ATO7_06730 | ATO7_05735 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Exodeoxyribonuclease IX; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | 0.989 |
| ATO7_06730 | ATO7_08452 | ATO7_06730 | ATO7_08452 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Metallophosphoesterase; COG0420 DNA repair exonuclease. | 0.635 |
page 1 of 5