STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_05965COG2863 Cytochrome c553. (109 aa)    
Predicted Functional Partners:
ATO7_14953
Hypothetical protein; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
   
 0.873
ATO7_05970
COG2863 Cytochrome c553.
 
   
0.818
ATO7_15173
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.815
ATO7_14673
COG2857 Cytochrome c1.
 
 
 0.750
ATO7_11028
Rubredoxin-type Fe(Cys)4 protein; COG1773 Rubredoxin.
   
 0.711
ATO7_05975
Porin family outer membrane protein.
       0.709
ATO7_01335
COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases.
    
  0.706
ATO7_08852
COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
  
 0.694
ATO7_02365
Putative quinoprotein ethanol dehydrogenase; COG4993 Glucose dehydrogenase.
 
 
 0.690
ATO7_15203
Cytochrome oxidase assembly protein, Sco1/SenC family.
 
     0.667
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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