STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_06080Hypothetical protein; COG3386 Gluconolactonase. (396 aa)    
Predicted Functional Partners:
ATO7_02365
Putative quinoprotein ethanol dehydrogenase; COG4993 Glucose dehydrogenase.
  
  
 0.780
rnt
Ribonuclease T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.
       0.774
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
       0.773
ATO7_06085
Hemolysin; COG3176 Putative hemolysin.
       0.527
ATO7_06090
COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase.
       0.527
ATO7_08182
Hypothetical protein; COG1858 Cytochrome c peroxidase.
  
  
  0.487
ATO7_05600
PKD domain-containing protein; COG3979 Uncharacterized protein contain chitin-binding domain type 3.
  
    0.482
ATO7_04085
Cytochrome c'.
  
  
  0.481
ATO7_11848
Hypothetical protein.
  
     0.434
ATO7_06095
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
       0.424
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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