STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_06325COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily. (324 aa)    
Predicted Functional Partners:
ATO7_06335
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.999
ATO7_06340
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.994
ATO7_16235
Hypothetical protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.991
ATO7_06345
Periplasmic oligopeptide-binding protein; COG4166 ABC-type oligopeptide transport system, periplasmic component.
 
 0.960
ATO7_16240
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.923
msbA
Lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
   
 
0.922
ATO7_03470
Putative ABC transporter transmembrane region; COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
   
 
0.922
ATO7_14078
COG1131 ABC-type multidrug transport system, ATPase component.
   
 
0.811
oppD
COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
    
0.802
ATO7_16245
COG0747 ABC-type dipeptide transport system, periplasmic component.
 
 
 0.754
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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