STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_06405COG2909 ATP-dependent transcriptional regulator. (896 aa)    
Predicted Functional Partners:
ATO7_11898
LuxR family transcriptional regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
  
  0.591
ATO7_00270
Two component LuxR family transcriptional regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
  
  0.563
ATO7_00260
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
  
  0.547
ATO7_00255
Two component sensor histidine kinase transcription regulator protein; COG4585 Signal transduction histidine kinase.
  
     0.515
ATO7_06400
GMC oxidoreductase; COG2303 Choline dehydrogenase and related flavoproteins.
       0.515
ATO7_00275
COG4585 Signal transduction histidine kinase.
  
   
 0.467
ATO7_06410
SlfC; COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
       0.459
ATO7_12428
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
  
  0.446
ATO7_13418
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
  
  0.430
ATO7_02160
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
  
  0.410
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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