STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_07135COG2059 Chromate transport protein ChrA. (398 aa)    
Predicted Functional Partners:
ATO7_07125
Hypothetical protein.
       0.762
ATO7_07130
TPR repeat-containing protein; COG0457 FOG: TPR repeat.
       0.762
ATO7_07140
Regulatory protein TetR; COG1309 Transcriptional regulator.
       0.506
cysC
Sulfate adenylyltransferase subunit 1; Catalyzes the synthesis of activated sulfate.
     
 0.453
ATO7_07145
COG1960 Acyl-CoA dehydrogenases.
       0.441
ATO7_01000
Hypothetical protein.
  
     0.435
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.