STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_07382COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism. (139 aa)    
Predicted Functional Partners:
ATO7_07377
COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
 
     0.932
ATO7_11038
COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
 
  
 0.793
ATO7_07447
COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
 
  
 0.779
ATO7_07387
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
     0.661
ATO7_01840
COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
  0.462
ATO7_13663
Flavodoxin reductase-like protein; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
  0.462
ATO7_14888
Oxidoreductase FAD-binding domain-containing protein; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
  0.462
ATO7_07467
Hydrolase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
     0.431
ATO7_11788
COG3917 2-hydroxychromene-2-carboxylate isomerase.
  
     0.420
ATO7_10472
Hypothetical protein; COG3616 Predicted amino acid aldolase or racemase.
  
     0.407
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.