STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_07442Hypothetical protein; COG1305 Transglutaminase-like enzymes, putative cysteine proteases. (225 aa)    
Predicted Functional Partners:
ATO7_07447
COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
       0.773
ATO7_07452
COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
       0.723
ATO7_07457
COG0183 Acetyl-CoA acetyltransferase.
       0.723
ATO7_07462
COG1960 Acyl-CoA dehydrogenases.
      0.676
ATO7_07437
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
       0.462
ATO7_01435
Hypothetical protein.
  
     0.443
ATO7_07682
Hypothetical protein.
  
  
 0.421
ATO7_07467
Hydrolase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.410
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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