STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_07757COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). (305 aa)    
Predicted Functional Partners:
ATO7_07752
Oxidoreductase, zinc-binding dehydrogenase family protein; COG2130 Putative NADP-dependent oxidoreductases.
 
     0.802
ATO7_07322
Carbamoyl-phosphate synthase L chain ATP-binding protein.
  
 
 0.729
ATO7_10612
Modular polyketide synthase; COG2070 Dioxygenases related to 2-nitropropane dioxygenase.
  
 0.710
ATO7_11278
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
  
  0.658
apaH
COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases.
    
  0.639
ATO7_16325
Hypothetical protein; COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases.
    
  0.639
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
     
 0.591
ATO7_00360
COG1605 Chorismate mutase.
     
 0.583
ATO7_07747
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.539
ATO7_09027
Hypothetical protein.
  
  
  0.525
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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